PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G009800.2
Common NameB456_006G009800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 249aa    MW: 28000.7 Da    PI: 10.2346
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G009800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.81e-3052132274
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa......sec..e 74 
                          g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ +++      s++   
  Gorai.006G009800.2  52 FGGKDRHSKVYTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPMPPPpanfpiSDAfwR 132
                         689*************************************************************66666333322111221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.00454112IPR017887Transcription factor TCP subgroup
PfamPF036344.5E-2854139IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MISSSKNTDF PTRQDEDDDK RNETNKGPSS SSSSSQWLRL KDPRIVRVSR AFGGKDRHSK  60
VYTIRGLRDR RVRLSVPTAI QLYDLQDRLG LNQPSKVVDW LLNAAKHEID ELPPLPMPPP  120
PANFPISDAF WRTKSKEVTR DVIDDKDDKH RRNEVHAPQV DNFNVVAAPL PSALSLCPLP  180
PPQPGGGAPP LFPPHVVDPR QQVNHFQMLS SGAQQNLLLN SLNFPPITQS FRPFQLMPPR  240
FPHNQPDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1859113155Putative transcription factor PCF6
5zkt_B1e-1859113155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.1501e-162flower|seedling| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5277081e-142HQ527708.1 Gossypium herbaceum clone NBRI_A_8683 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016668162.11e-142PREDICTED: transcription factor TCP13-like
RefseqXP_016668163.11e-142PREDICTED: transcription factor TCP13-like
RefseqXP_016668164.11e-142PREDICTED: transcription factor TCP13-like
RefseqXP_017608896.11e-142PREDICTED: transcription factor TCP13-like
RefseqXP_017608897.11e-142PREDICTED: transcription factor TCP13-like
RefseqXP_017608898.11e-142PREDICTED: transcription factor TCP13-like
TrEMBLA0A0D2RVE41e-178A0A0D2RVE4_GOSRA; Uncharacterized protein
STRINGGorai.006G009800.11e-142(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.16e-41plastid transcription factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]