PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G009800.1
Common NameB456_006G009800, LOC105798109
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 286aa    MW: 32029.8 Da    PI: 7.9301
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G009800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP998.6e-3152137279
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa......sec..eaesss 79 
                          g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ +++      s++   ++s++
  Gorai.006G009800.1  52 FGGKDRHSKVYTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPMPPPpanfpiSDAfwRTKSKE 137
                         689*************************************************************6666533333311123111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.00454112IPR017887Transcription factor TCP subgroup
PfamPF036343.9E-2854145IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MISSSKNTDF PTRQDEDDDK RNETNKGPSS SSSSSQWLRL KDPRIVRVSR AFGGKDRHSK  60
VYTIRGLRDR RVRLSVPTAI QLYDLQDRLG LNQPSKVVDW LLNAAKHEID ELPPLPMPPP  120
PANFPISDAF WRTKSKEVTR DVIDDKDDKH RRNEGDDDDD HGTQHVSSGS YYHFEPSNFP  180
LSSHLVSHGF AVHAPQVDNF NVVAAPLPSA LSLCPLPPPQ PGGGAPPLFP PHVVDPRQQV  240
NHFQMLSSGA QQNLLLNSLN FPPITQSFRP FQLMPPRFPH NQPDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-1959113155Putative transcription factor PCF6
5zkt_B8e-1959113155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.1500.0flower|seedling| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5277081e-142HQ527708.1 Gossypium herbaceum clone NBRI_A_8683 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483482.10.0PREDICTED: transcription factor TCP13-like
RefseqXP_012483483.10.0PREDICTED: transcription factor TCP13-like
RefseqXP_012483484.10.0PREDICTED: transcription factor TCP13-like
TrEMBLA0A0D2SQ970.0A0A0D2SQ97_GOSRA; Uncharacterized protein
STRINGGorai.006G009800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2826933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-40plastid transcription factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]