PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G237400.4
Common NameB456_005G237400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 376aa    MW: 41177.6 Da    PI: 9.7565
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G237400.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1452.4e-14297349557
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                         +r++r++kNRe+A rsR+RK+a++ eLe +v++L++ N++L k+ ee  ++ +
  Gorai.005G237400.4 297 RRQKRMIKNRESAARSRARKQAYTLELEAEVAKLKEMNQELLKKQEEVMEMQK 349
                         79****************************************99999988865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.0E-12293358IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.461295346IPR004827Basic-leucine zipper domain
PfamPF001701.8E-12297349IPR004827Basic-leucine zipper domain
CDDcd147073.08E-25297351No hitNo description
SuperFamilySSF579591.2E-9297345No hitNo description
Gene3DG3DSA:1.20.5.1706.3E-13297347No hitNo description
PROSITE patternPS000360300315IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEFIGQFDCG HNILLLWKMG SHLNFKNFGG DGNNGSKPVV NSPLVRQSSI YSLTFDELQS  60
TFGGLGKDFG SMNMDELLRN ISTAEETQSA MTASVSAGEG GDVSGGNLQK QGSLSLPRTL  120
SQKTVDEVWK YLMKESDGGS NDGSTGGEAN LPQRQQTLGT MTLEEFLARA GVVREDMQQI  180
GMVNNGGFFA DNSPLALGFQ QANTNNGFAS GVKSSSQLQQ QPQPLFPKQQ VVAFAPPMHL  240
MNATQLASPG AKGSPASQIS SDVVSKNSID TTSPSPVPYI FGRGRKCGAN LEKVVERRQK  300
RMIKNRESAA RSRARKQAYT LELEAEVAKL KEMNQELLKK QEEVMEMQKN QMLEKVNRPW  360
GRKRRCLRRT ITCPW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480226.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 6 isoform X1
SwissprotQ9M7Q31e-112AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6
TrEMBLA0A0D2NHM80.0A0A0D2NHM8_G
STRINGPOPTR_0009s10400.11e-137(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49720.11e-88abscisic acid responsive element-binding factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]