PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G237400.1
Common NameB456_005G237400, LOC105795245
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 407aa    MW: 44115.9 Da    PI: 9.5957
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G237400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.82.7e-14328380557
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                         +r++r++kNRe+A rsR+RK+a++ eLe +v++L++ N++L k+ ee  ++ +
  Gorai.005G237400.1 328 RRQKRMIKNRESAARSRARKQAYTLELEAEVAKLKEMNQELLKKQEEVMEMQK 380
                         79****************************************99999988865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.0E-12324389IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.461326377IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.1E-13328378No hitNo description
SuperFamilySSF579599.85E-10328377No hitNo description
PfamPF001702.0E-12328380IPR004827Basic-leucine zipper domain
CDDcd147071.58E-25328382No hitNo description
PROSITE patternPS000360331346IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEFIGQFDCG HNILLLWKMG SHLNFKNFGG DGNNGSKPVV NSPLVRQSSI YSLTFDELQS  60
TFGGLGKDFG SMNMDELLRN ISTAEETQSA MTASVSAGEG GDVSGGNLQK QGSLSLPRTL  120
SQKTVDEVWK YLMKESDGGS NDGSTGGEAN LPQRQQTLGT MTLEEFLARA GVVREDMQQI  180
GMVNNGGFFA DNSPLALGFQ QANTNNGFAS GVKSSSQLQQ QPQPLFPKQQ VVAFAPPMHL  240
MNATQLASPG AKGSVVGIGD PSMNNNLVQN TGLQGGGMGI VGLGSPASQI SSDVVSKNSI  300
DTTSPSPVPY IFGRGRKCGA NLEKVVERRQ KRMIKNRESA ARSRARKQAY TLELEAEVAK  360
LKEMNQELLK KQEEVMEMQK NQMLEKVNRP WGRKRRCLRR TITCPW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480226.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 6 isoform X1
SwissprotQ9M7Q31e-121AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6
TrEMBLA0A0D2SMH30.0A0A0D2SMH3_G
STRINGPOPTR_0009s10400.11e-149(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73427129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34000.23e-96abscisic acid responsive elements-binding factor 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]