PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G232500.2
Common NameB456_005G232500, LOC105795188
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 207aa    MW: 21475.1 Da    PI: 4.7975
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G232500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26055.22.1e-17294198
              DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88
                        +C++C++lr++C+++C+l++ +     p++q++++ +v+k+FG++ ++++l+++   +r+            ra +Pv+Gavg++++++++++
  Gorai.005G232500.2  2 SCNGCRILRKGCSENCMLRQSLqcienPQAQAHATVFVAKFFGRAGLMSFLSSVASPQRPV----------GRAINPVSGAVGLLWTGNWNVC 84
                        6**********************99*********************************995..........89******************** PP

              DUF260 89 qlkaelallk 98
                        q++++++l++
  Gorai.005G232500.2 85 QSAVQTVLQG 94
                        ***9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.136197IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-13291IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSCNGCRILR KGCSENCMLR QSLQCIENPQ AQAHATVFVA KFFGRAGLMS FLSSVASPQR  60
PVGRAINPVS GAVGLLWTGN WNVCQSAVQT VLQGGTLQPL PEFSGGVSGS DFEDVGETVG  120
VGGGGGAGGP CIQSGGFVDV VECKASDLNL CLMIGDDDRA VQRRRESTSS EESETTTLGS  180
RFSGDGNSSN DSCGADGERK LLRLFI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5817782e-89JX581778.1 Gossypium hirsutum clone NBRI_GE14483 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480163.11e-147PREDICTED: LOB domain-containing protein 38-like isoform X2
SwissprotQ9SN233e-51LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A0D2PY711e-147A0A0D2PY71_G
STRINGPGSC0003DMT4000661652e-61(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-52LOB domain-containing protein 38
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]