PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G109600.1
Common NameB456_005G109600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 174aa    MW: 20155.8 Da    PI: 9.9186
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G109600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1361.5e-1155101551
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                         ++ +r+++NRe+ArrsR RK++ ++ L   + eL++ N +    ++ 
  Gorai.005G109600.1  55 RKRKRMESNRESARRSRMRKQKHLDDLVGQITELKKDNNQILTSINF 101
                         6789**********************************988777765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.3E-1146135No hitNo description
SMARTSM003388.2E-1751115IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.05953116IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.05E-1255107No hitNo description
PfamPF001704.4E-95599IPR004827Basic-leucine zipper domain
CDDcd147025.20E-1856106No hitNo description
PROSITE patternPS0003605873IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MSPVVSEILR SGFIINSSLR RRTHLVQSFS VVFLYCGNSN SNSSGSTQHQ LMDQRKRKRM  60
ESNRESARRS RMRKQKHLDD LVGQITELKK DNNQILTSIN FTTHRYLNIE AENSVLRAQM  120
TELSQRLDSL NDILQYLNRE GIEYTPDCFT NPFNVPYLNQ QPPIMASAHI FQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15475RKRKRMESNRESARRSRMRKQK
26774RRSRMRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478104.11e-98PREDICTED: ocs element-binding factor 1-like
SwissprotQ9LZP84e-31BZP53_ARATH; bZIP transcription factor 53
TrEMBLA0A0D2NAP51e-126A0A0D2NAP5_G
STRINGPOPTR_0005s25290.11e-53(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.16e-41G-box binding factor 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]