PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G079200.1
Common NameB456_005G079200, LOC105797036
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 448aa    MW: 51351 Da    PI: 6.363
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G079200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.72.1e-25121217185
            trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                         +Wt+++v++Li+a+++++e+   g+           +kk++W++vsk+m+er +++sp+qC++k+++lnkrykk++++ +++ +++++++ 
  Gorai.005G079200.1 121 KWTDKMVRLLITAVSYIGEDAAGGCgggmrrkfaviQKKGKWKSVSKVMAERSYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENP 211
                         7*********************998899999999************************************************569999888 PP

            trihelix  80 pyfdql 85 
                         +++d +
  Gorai.005G079200.1 212 ALLDVI 217
                         887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.3E-23119244No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEGNLSQGGM IPGGGSFGGL DLQGSMRVHN HAQNPHSIHQ HHHPNPRQGA SLHASIHEDF  60
PLKMGNIQNS DQIISLMDYN KGERGKSSVS DEDEPSFTEE GIDGHNDGSK GKKGSPWQRV  120
KWTDKMVRLL ITAVSYIGED AAGGCGGGMR RKFAVIQKKG KWKSVSKVMA ERSYHVSPQQ  180
CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKDDVRK ILSSKHLFYE  240
EMCSYHNGNR LHLPHDPQLQ RSLQLAFRIK DDQEKDDAKR HRHDDNDDDD DDDMETDDHD  300
DFEENHASHG DDRGIYRVLG GSAKRSRQVQ VHEDACFHNS SNSQDCNKNS FPYPPPAQAD  360
INQAPPENPR AAWLQKQWIE SCSLQLEEQK LQIQVEMLEL EKQRFKWQRF SKKRDRELEK  420
MRMENERMKL ENERMALELK QKELDAD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482417.10.0PREDICTED: uncharacterized protein LOC105797036
TrEMBLA0A0D2RHC70.0A0A0D2RHC7_GOSRA; Uncharacterized protein
STRINGGorai.005G079200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-172sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]