PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G076200.6
Common NameB456_005G076200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 556aa    MW: 62319.8 Da    PI: 4.9457
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G076200.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.26.6e-53211472128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         ppGfrFhPtdeelv +yLk+k+ +k+l+l ++i+e+d+yk +P++Lp +  +k+++++w+fF++rd+ky++g r+nrat +gyWkatgkd+
  Gorai.005G076200.6  21 PPGFRFHPTDEELVLYYLKRKICKKRLKL-DIIRETDVYKRDPEELPgQsVLKNGDRQWFFFCPRDRKYPNGARSNRATIHGYWKATGKDR 110
                         8****************************.99**************96447788999********************************** PP

                 NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++ ++++vg+kktLvfy+grap+ge+tdWvmhey+l
  Gorai.005G076200.6 111 SITC-NSRVVGIKKTLVFYRGRAPNGERTDWVMHEYTL 147
                         ****.999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-5917170IPR003441NAC domain
PROSITE profilePS5100555.46220170IPR003441NAC domain
PfamPF023651.0E-2721147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MKVTATAVTV DSGFGDDQVW PPGFRFHPTD EELVLYYLKR KICKKRLKLD IIRETDVYKR  60
DPEELPGQSV LKNGDRQWFF FCPRDRKYPN GARSNRATIH GYWKATGKDR SITCNSRVVG  120
IKKTLVFYRG RAPNGERTDW VMHEYTLDEE ELKRCQNVKD YYALYKLYKK SGPGPKNGEQ  180
YGAPFKEEAW DDEEYSSIPL DTITPVKPPN EVVSAEDTQS TLLDPSPRGV LFPEQLTVLH  240
GQASFEFPES PISQLLLQEA PEVTPVTDHL DQVPQLCEED FLEIDDLLGP EPLISNIEKP  300
VENKQFNELD GLSEFDLYHD AAMFLQDMGS IDQGTVPFLY DNMINQWQNQ ANANMMEQHL  360
QPQLNASGGN MLNQMVYQSG PNINSMDQQL VLHSSVDQVD YHGQNQQLQM DQINGALWTH  420
DQNGDVFIPS GSNLGNASPT SGFVNNGPKQ DQGNKNDGSG GGSWFSSSLW SFVDSIPTAP  480
ASAAESPLVN RALERMSSFS KLRIHAMNTA VNGSASARRR SRNRGFFFIS ILGALCAVLW  540
FLIGTVRVLG RSISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-482114716140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13847KRKICKKRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472220.0KC847222.1 Gossypium hirsutum NAC domain protein NAC45 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482359.10.0PREDICTED: NAC domain-containing protein 17-like isoform X2
TrEMBLA0A0D2RH340.0A0A0D2RH34_GOSRA; Uncharacterized protein
STRINGGorai.005G076200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-104NAC domain containing protein 17
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]