PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G020600.1
Common NameB456_005G020600, LOC105796423
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 258aa    MW: 29845.3 Da    PI: 5.1914
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G020600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.72.1e-2731322128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                           GfrF+Ptdee++ e L +kv+g++ + ++++i + +iy++eP++L+ +  ++  +++e y++++r++ +      + ++ +g Wkat +
  Gorai.005G020600.1   3 LTGFRFSPTDEEVI-EILSQKVSGNTsMAAFDFIIQKNIYDFEPQELHgSesTIGLNKNERYYYCRRESDS------REVMGRGWWKATSH 86 
                         57************.88*****99997778899**************84344555588899*****98753......447889******** PP

                 NAM  89 dkevlskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                          k+v s +ge++g k+ L+f+      +g+++ + ktdW+mhey l
  Gorai.005G020600.1  87 VKAVSSPNGEVMGYKRPLTFHrfkdniQGNRKGAIKTDWIMHEYGL 132
                         *********************88877779999999*********76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.8042147IPR003441NAC domain
SuperFamilySSF1019413.4E-303147IPR003441NAC domain
PfamPF023651.7E-154131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVLTGFRFSP TDEEVIEILS QKVSGNTSMA AFDFIIQKNI YDFEPQELHG SESTIGLNKN  60
ERYYYCRRES DSREVMGRGW WKATSHVKAV SSPNGEVMGY KRPLTFHRFK DNIQGNRKGA  120
IKTDWIMHEY GLQSIHTEWR LCKIKYKGKE KVEEDMTPME KTFGHSNNKT LLTSFEAKDG  180
SSSSSNSIAP MQLELAFEQP PLTQPILPVN NDINYNYDSY CWSNSNMMLY EDHQLADQLD  240
TLSEQPFSDL WSWDDYH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-14515018171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5862412e-53JX586241.1 Gossypium hirsutum clone NBRI_GE20018 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481594.10.0PREDICTED: putative NAC domain-containing protein 94
TrEMBLA0A0D2S9P50.0A0A0D2S9P5_GOSRA; Uncharacterized protein
STRINGGorai.005G020600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16224614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-19NAC domain containing protein 42
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]