PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G013100.1
Common NameB456_005G013100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 320aa    MW: 36442.8 Da    PI: 4.4961
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G013100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.94.1e-1971543128
                 NAM   3 pGfrFhPtdeelvveyLkkk.vegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkyatgk................. 72 
                         +G+ F+P+++ l+  yL+ + + g++  ++++i+   di++++PwdLp+  +++ +++e +f  ++  kya++k                 
  Gorai.005G013100.1   7 KGYGFNPSEQILI-GYLRDRtLFGRDYLVQDIIDLGhDICNYDPWDLPScdSITPSDSERFFIYPKTYKYANSKskvigtptgqvpkgeqw 96 
                         799*******999.56665516677777777777657***********4346666899************986645555555556655555 PP

                 NAM  73 ..rknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             nratk+g Wk +g + +v+s+  +++++g+k+ L f +++ p+  kt+W++ +++l
  Gorai.005G013100.1  97 qpMINRATKNGNWKVSGDQVDVKSSddTKQVIGIKTRLYFRHNSCPN--KTTWTLYQFEL 154
                         5555666****************99777888*********9766666..********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.1615172IPR003441NAC domain
SuperFamilySSF1019411.23E-207172IPR003441NAC domain
PfamPF023652.0E-77154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MNNLKLKGYG FNPSEQILIG YLRDRTLFGR DYLVQDIIDL GHDICNYDPW DLPSCDSITP  60
SDSERFFIYP KTYKYANSKS KVIGTPTGQV PKGEQWQPMI NRATKNGNWK VSGDQVDVKS  120
SDDTKQVIGI KTRLYFRHNS CPNKTTWTLY QFELVGIDPC QDKYFLGKVI MKKPTNISSN  180
NIDDQISIPQ VQVELGSEPL VENEVTNEYG WTQSEQTYEF ITPCPVFDIN DGNEVISNHQ  240
SQINMELIRS LEAPNIGIED QNQSYRNIGI DINDRTVPDG SNQLNIVAVA ENESSMLPSN  300
LHDLIQMKWS DLYNLYGWC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632581.10.0PREDICTED: NAC domain-containing protein 86-like
TrEMBLA0A0D2S9D60.0A0A0D2S9D6_GOSRA; Uncharacterized protein
STRINGGorai.005G013100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1834949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.26e-18NAC 014
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]