PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G013000.1
Common NameB456_005G013000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 445aa    MW: 50028.9 Da    PI: 4.5931
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G013000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.21.6e-19271743128
                 NAM   3 pGfrFhPtdeelvveyLkkk.vegkkleleev.ikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgk................. 72 
                         +G+ F+P+d+ l+ +yL+ + + g++  ++++ + + di++++PwdLp   +v+ +++e +f  ++  kya++k                 
  Gorai.005G013000.1  27 KGYGFKPSDQILI-DYLRDRtLFGRDYLVQDIiVLSHDICNYDPWDLPgcDSVTPNDSERFFIYPKTYKYANSKpkvigtptgqvpnsdqr 116
                         799*********9.77777625566655556636677***********5336666889*************76656666666666666665 PP

                 NAM  73 ..rknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             nratk+g Wk +g   +v+s+  +++++g+k+ L f +++ p+  kt+ v+h+y+l
  Gorai.005G013000.1 117 qpMINRATKNGKWKVSGVRVNVKSSdeTKQVIGIKTRLYFKHNSCPN--KTSCVLHQYEL 174
                         5556777***************998777788*********9766666..*********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-2023192IPR003441NAC domain
PROSITE profilePS5100523.25125192IPR003441NAC domain
PfamPF023651.5E-727174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MLISPIKAKQ IIRLCLPIHA MNNPKLKGYG FKPSDQILID YLRDRTLFGR DYLVQDIIVL  60
SHDICNYDPW DLPGCDSVTP NDSERFFIYP KTYKYANSKP KVIGTPTGQV PNSDQRQPMI  120
NRATKNGKWK VSGVRVNVKS SDETKQVIGI KTRLYFKHNS CPNKTSCVLH QYELVDIDPC  180
QDKYFLGKVI MKEFKQTNIS SNNINGRISI PEVRVELGPE PLVETEVTNE YEWTQSEQTN  240
EFITPCPVFG NENFIDDGNE VISNHQSQIN KELIRSLEVP NIGIEDQNQS YQNIGIDNDP  300
TVPDEGSNQH NIGAVAENES SMLPSNLHDH LIDFINQMEW SDLYNLCRGN DDGLFLDELS  360
DEPPELGPQN QCGINQQVAA GAEIESTNLP PLDVTESSYS TDSVRKRSAL EVERSATGVE  420
TELAQQQANR SRLKSSSCLS PVFD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016713909.10.0PREDICTED: uncharacterized protein LOC107927358
TrEMBLA0A0D2PL930.0A0A0D2PL93_GOSRA; Uncharacterized protein
STRINGGorai.005G013000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1834949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.14e-19NAC 014
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]