PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G274100.1
Common NameB456_004G274100, LOC105792837
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 170aa    MW: 18554.5 Da    PI: 10.4602
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G274100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.32.1e-1586148163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         +ke kr +r+ +NR++A+  R+RKka++ eLe++v  Le++N++L ++l++l +e + l++ v
  Gorai.004G274100.1  86 DKENKRLKRLLRNRVSAQQARERKKAYLNELETRVRDLEKKNSELEERLSTLHNENQMLRQIV 148
                         5899*****************************************************999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000419.3E-585101IPR001630cAMP response element binding (CREB) protein
SMARTSM003381.6E-1486150IPR004827Basic-leucine zipper domain
PfamPF001703.4E-1487148IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.66888151IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.19E-1390148No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-1690150No hitNo description
CDDcd147042.04E-1691142No hitNo description
PROSITE patternPS00036093108IPR004827Basic-leucine zipper domain
PRINTSPR000419.3E-5103123IPR001630cAMP response element binding (CREB) protein
PRINTSPR000419.3E-5123140IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MQEQGTSSIA ASSLPSSSER SSSSALQVEV KEGMESDEEI RRVPEIGGEA SAAPAAGREP  60
CSLTRPDRPQ PSGEGGQRKR GRSPADKENK RLKRLLRNRV SAQQARERKK AYLNELETRV  120
RDLEKKNSEL EERLSTLHNE NQMLRQIVKN TTASRRGGNG SSNAADGTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A3e-15111150342Transcription factor HY5
2oqq_B3e-15111150342Transcription factor HY5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477096.11e-117PREDICTED: transcription factor HY5
SwissprotQ9SM502e-63HY5_SOLLC; Transcription factor HY5
TrEMBLA0A0D2N4I91e-117A0A0D2N4I9_G
STRINGPOPTR_0018s01530.15e-75(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56912749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.15e-52bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]