PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G270400.1
Common NameB456_004G270400, LOC105792794
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 290aa    MW: 33220.1 Da    PI: 6.1114
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G270400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.13.6e-49181433128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                         pGfrFhPtdeel+ +yL++kv++k+l++ e ik++diyk++P+dLpk+   +e+e+yfF++r +ky+++ r+nr+t sg+Wkatg dk+v+
  Gorai.004G270400.1  18 PGFRFHPTDEELIGFYLRRKVDNKSLRI-ELIKQIDIYKYDPSDLPKTSMMGENELYFFCRRGRKYRNSVRPNRVTGSGFWKATGIDKPVF 107
                         9***************************.89***************87777899************************************* PP

                 NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         s  ++e++glkktLv+y+g+a kg+ktdW+mhe+rl
  Gorai.004G270400.1 108 SVgSSEAIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 143
                         9977888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-559164IPR003441NAC domain
PROSITE profilePS5100551.82516164IPR003441NAC domain
PfamPF023656.7E-2518143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MNMVHGTTTT VDEDVPLPGF RFHPTDEELI GFYLRRKVDN KSLRIELIKQ IDIYKYDPSD  60
LPKTSMMGEN ELYFFCRRGR KYRNSVRPNR VTGSGFWKAT GIDKPVFSVG SSEAIGLKKT  120
LVYYRGSAGK GTKTDWMMHE FRLPNPTLTA QDAEVWTICR IFKRHKKNKQ EWRQGAAKRA  180
STSNGNGVHG YERCSVESSS HENYITFGSQ SIENYDDNDD DDGVDGEMVM DHMKNDGSCR  240
REWYHEEMQC MVSSSSPSSS FSTENDFFTN ANWDELKSVV ELDLDPFLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-4861651166NO APICAL MERISTEM PROTEIN
1ut4_B2e-4861651166NO APICAL MERISTEM PROTEIN
1ut7_A2e-4861651166NO APICAL MERISTEM PROTEIN
1ut7_B2e-4861651166NO APICAL MERISTEM PROTEIN
4dul_A2e-4861651166NAC domain-containing protein 19
4dul_B2e-4861651166NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472400.0KC847240.1 Gossypium hirsutum NAC domain protein NAC63 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314214.10.0transcription factor JUNGBRUNNEN 1-like
RefseqXP_012477038.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
RefseqXP_012477039.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
RefseqXP_012477040.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK554e-83NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0D2R4X70.0A0A0D2R4X7_GOSRA; Uncharacterized protein
TrEMBLW6JAQ30.0W6JAQ3_GOSHI; NAC domain protein NAC63
STRINGGorai.004G270400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.17e-85NAC domain containing protein 42
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  3. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  4. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  5. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  6. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]