PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G229700.1
Common NameB456_004G229700, LOC105793702
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 246aa    MW: 27806 Da    PI: 6.2889
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G229700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.84.2e-161152344
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                        i ++s r+ t+ kR +g++KK +ELS+LCd++++ i++s+  
  Gorai.004G229700.1 11 ITDDSARKATYKKRTKGLMKKLSELSTLCDIDACSIMYSPYE 52
                        8899***********************************854 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.699149IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-21160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-22294IPR002100Transcription factor, MADS-box
CDDcd002664.55E-29285No hitNo description
PRINTSPR004041.6E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-161151IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MTRKKVKLAY ITDDSARKAT YKKRTKGLMK KLSELSTLCD IDACSIMYSP YESQLEVWPS  60
PMGVQQVLSK LETIPEMEKS KNMLNQESFL SQKTTKASEQ LKKHCKENWE KEMTQVMFNT  120
ICGKGVIHGL NFEALSEINL LLDKKMSDID KRIDALARTP LNPQWVSSSS SSSLVAVPPM  180
MMVAPETMPR TGTEDIVQED VNEMDPIQRQ QWIMELMSNN NSQTHVGGNE MMFQFGDNIN  240
PNNGL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11631RKATYKKRTKGLMKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478002.10.0PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A0D2S4H80.0A0A0D2S4H8_GOSRA; Uncharacterized protein
STRINGGorai.004G229700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-48AGAMOUS-like 80
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]