PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G227000.1
Common NameB456_004G227000, LOC105792366
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 482aa    MW: 55019 Da    PI: 4.4246
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G227000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.94.1e-3641342128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          +GfrFhPtdeel+ eyL+ k+ +++  + +vi+e+ di+++ePw+Lp +  ++++++ wyf  + + ky+++k  +r+t +gyWk tgk 
  Gorai.004G227000.1   4 VKGFRFHPTDEELI-EYLQIKTFNRDSLV-QVIAEIpDICEFEPWELPgRsVLQTGDRLWYFMYPPKYKYRNSKLVSRTTLEGYWKITGKA 92 
                         68************.9******9999666.89****************6347788999********************************* PP

                 NAM  90 kevlsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                         ++++++ +g ++g kktL fykg  +++  ++t Wvmhey+l
  Gorai.004G227000.1  93 RKIVNSeTGMEIGNKKTLLFYKGqcNDKIRNNTCWVMHEYEL 134
                         ***99867888**********9833444456899******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-362156IPR003441NAC domain
PROSITE profilePS5100540.7523156IPR003441NAC domain
PfamPF023652.0E-195134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MNMVKGFRFH PTDEELIEYL QIKTFNRDSL VQVIAEIPDI CEFEPWELPG RSVLQTGDRL  60
WYFMYPPKYK YRNSKLVSRT TLEGYWKITG KARKIVNSET GMEIGNKKTL LFYKGQCNDK  120
IRNNTCWVMH EYELKAMLDS TNSHQKTFKL CKLKKKTNIS SKEAGQLDQY SLSDLENHVA  180
INAPLEDILD PNGSSEPEAS NNHNDVHNLC RTVDTYGDER SNQHNIVDED EGPNISTNFV  240
NHVAEDAIPE VPSHIFKVYQ NGLEDNNWVQ DLYSTIEQDD ESCNLIITSF DETITNESSN  300
QHNIVVAEKG IETPIISYDE TVTNERSNQH NIVVIEEGTE MSVISYDETV ANERSNQHNI  360
VDVDEGFEMP SNLKYLVEED TISTELLYND GLYSRSLFGE LLAEPEATNN SNWIQNQYIT  420
KKEDGEFLNS TLADKNKAYL QEGNTQWCLA ADGEGFSLPC IGALMESSNS MEKSSKRPRR  480
M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-26116215171NO APICAL MERISTEM PROTEIN
1ut4_B5e-26116215171NO APICAL MERISTEM PROTEIN
1ut7_A5e-26116215171NO APICAL MERISTEM PROTEIN
1ut7_B5e-26116215171NO APICAL MERISTEM PROTEIN
3swm_A5e-26116218174NAC domain-containing protein 19
3swm_B5e-26116218174NAC domain-containing protein 19
3swm_C5e-26116218174NAC domain-containing protein 19
3swm_D5e-26116218174NAC domain-containing protein 19
3swp_A5e-26116218174NAC domain-containing protein 19
3swp_B5e-26116218174NAC domain-containing protein 19
3swp_C5e-26116218174NAC domain-containing protein 19
3swp_D5e-26116218174NAC domain-containing protein 19
4dul_A5e-26116215171NAC domain-containing protein 19
4dul_B5e-26116215171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476363.10.0PREDICTED: NAC domain-containing protein 45-like isoform X1
TrEMBLA0A0D2PGQ70.0A0A0D2PGQ7_GOSRA; Uncharacterized protein
STRINGGorai.004G227000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2437734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.27e-34TCV-interacting protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]