PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G206900.1
Common NameB456_004G206900, LOC105792163
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 346aa    MW: 36349.7 Da    PI: 8.3417
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G206900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.99.1e-3562171299
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.......sec....eaesssss 81 
                         ++k+++++++hTkv+gR+RR+R++a+ aar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a       +      +a+s+ s+
  Gorai.004G206900.1  62 TVKRSSTKDRHTKVEGRGRRIRIPATSAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAiavsvggT-LkiptTAGSNASN 151
                         789*************************************************************7777744333330.0332233333333 PP

                 TCP  82 asnsssg........kaaksaakskk 99 
                         ++n++++        k      k+k+
  Gorai.004G206900.1 152 NKNNNNQidddggatK------KTKR 171
                         3322222333332221......1111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-2867159IPR005333Transcription factor, TCP
PROSITE profilePS5136925.01168122IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDLDDDGGTS DLSTSAGEPN AATDKICESS AFQIKPFKEE PIDSHPPPPI GVVPVSMRPL  60
PTVKRSSTKD RHTKVEGRGR RIRIPATSAA RIFQLTRELG HKSDGETVRW LLEHAEQAII  120
EATGTGTVPA IAVSVGGTLK IPTTAGSNAS NNKNNNNQID DDGGATKKTK RPAKSEFCDI  180
NDGNPFAISN QQQLVTQASG LAPVTPQGLV PVWAVGNTGM MIPANSFWMI PQPTATGAAN  240
GRLSNQQPSS PQIWALSPSV FNVAARPISS IVSTSNQSVC NGLSTSAVNR SSTAVAKKST  300
MAPSGSSSGG KAQMLRDFSL EIYDKQELQL MGRSESHQAA DASCF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476041.10.0PREDICTED: transcription factor TCP19-like
TrEMBLA0A0D2R8280.0A0A0D2R828_GOSRA; Uncharacterized protein
STRINGGorai.004G206900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17337611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.14e-62TCP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]