PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G181900.1
Common NameB456_004G181900, LOC105791891
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 407aa    MW: 43004.1 Da    PI: 6.5811
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G181900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.94e-22306368163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN  L++e+++lk e+++l +e+
  Gorai.004G181900.1 306 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENANLRSEVSRLKSEYEQLHAEN 368
                         89*********************************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.6E-30197IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.7E-50136273No hitNo description
Gene3DG3DSA:1.20.5.1705.1E-18299365No hitNo description
SMARTSM003383.9E-21306370IPR004827Basic-leucine zipper domain
PfamPF001703.0E-20306368IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.714308371IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-11309365No hitNo description
CDDcd147021.36E-24311361No hitNo description
PROSITE patternPS000360313328IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGSSEMDKAA KEKEPKTPPA ITAQESSSTT NSGSVNADWS GFQAYSPIPP HGFLASSPQA  60
PPYMWGVQHI MPPYGTPPHP YVAMYPHGGI YAHPSLPPGS YPFSPFAMPS PNGIAEASGN  120
TPGSMEMDGK PPEVKEKLPI KRSKGSLGSL NMITGKNNNL GKTSGASANG GYSKSADSGS  180
EGTSEGSDAN SQNDSQLQSG DGKDSGEGEA SQNGRSAHGP QNGGPNSAHS VANTALAIVP  240
ISTTGAATAV PGPTTNLHIG MDYWGTPASS NVPAMHAKVP STPVAGGIVT PGSRDNVQSQ  300
LWLQDERELK RQRRKQSNRE SARRSRLRKQ AECDELAQRA EALKEENANL RSEVSRLKSE  360
YEQLHAENAS LKERLGEIPG HEDLKSGRND QHRNEDEQTE IVQGSH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322328RRSRLRK
2322329RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475636.10.0PREDICTED: transcription factor HBP-1a
RefseqXP_012475637.10.0PREDICTED: transcription factor HBP-1a
SwissprotQ501B21e-171BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A0D2R6T00.0A0A0D2R6T0_G
STRINGGLYMA09G34170.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-152basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]