PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G167100.1
Common NameB456_004G167100, LOC105791712
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 375aa    MW: 41648.8 Da    PI: 9.9449
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G167100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.51.3e-2156147187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                         +W+++e+ aLi+a+r+++ +lrrg+lk+ +W+ev++++          ++++qC++k+e+l+kry+ + +++++   s+ +s++++f++++
  Gorai.004G167100.1  56 CWSHDETVALIDAYRDKWYTLRRGNLKASHWQEVADAVtrrcPMATPPKTAVQCRHKMEKLRKRYRTEIQRARSMpVSRFVSSWVHFKRMD 146
                         7*************************************64442233489*************************97799***********8 PP

            trihelix  87 a 87 
                         a
  Gorai.004G167100.1 147 A 147
                         5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.5E-2355148No hitNo description
SMARTSM005951.9E-1364153IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MSNPSSPSPE QGIPSNTSPP PPSETLLSLP APPTSRSTPS ATATVTPNPR RLPPPCWSHD  60
ETVALIDAYR DKWYTLRRGN LKASHWQEVA DAVTRRCPMA TPPKTAVQCR HKMEKLRKRY  120
RTEIQRARSM PVSRFVSSWV HFKRMDAMEK GPNVKADYNS DSPDDENGED EEDGQDQEFY  180
DDGYKNGSLN TRSVQKLYRN GIGNNGGSVS GDGNSGGFRI RIPTGVSIAQ PGPRFYGKID  240
HKYGTNPNPI PNVNANSHPS KGNFGGSGSG SAYGTRILRG FEDMPEKTAA SGKRERERDA  300
VTEMVSAIKV LGDGFVRMEQ MKMEMAREIE TMRMEMEMKR TEVILESQQR IVEAFAKAVS  360
ERKKKPKRMP SPQS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475374.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A0D2S0Z50.0A0A0D2S0Z5_GOSRA; Uncharacterized protein
STRINGGorai.004G167100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-84Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]