PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G161100.1
Common NameB456_004G161100, LOC105791636
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 255aa    MW: 26015.3 Da    PI: 7.769
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G161100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.33.5e-40351351100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ ++++eA+ar+rdPvyG+v++i++lqqq+ +l
  Gorai.004G161100.1  35 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICFEAQARLRDPVYGCVAHIFALQQQVVNL 125
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +ael++l+++
  Gorai.004G161100.1 126 QAELSYLQAH 135
                         *****99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.79134136IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-3935133IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSSNPSNSGG SVGGGSGSCS GSAGGSGGGG SGGGPCGACK FLRRKCVPGC IFAPYFDSEQ  60
GAAHFAAVHK VFGASNVSKL LLHIPVHKRL DAVVTICFEA QARLRDPVYG CVAHIFALQQ  120
QVVNLQAELS YLQAHLTTLE LPSPPPPPPP PSQTLVAAPP LSISDLPSAS SVPATYDLSS  180
LFDPMVAQTS WAMQQRQIDP RQYGGTGSAS STGSGDLQAL ARELLHRQGS PHLPCTDASV  240
SPAPSPSRSL SKGD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5869426e-41JX586942.1 Gossypium hirsutum clone NBRI_GE20894 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475250.10.0PREDICTED: LOB domain-containing protein 18
SwissprotO221313e-89LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A0D2MZ410.0A0A0D2MZ41_G
STRINGGLYMA03G02620.17e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.13e-85LOB domain-containing protein 18
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]