PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G153100.3
Common NameB456_004G153100, LOC105791547
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 366aa    MW: 39299.6 Da    PI: 7.7381
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G153100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.99.3e-23248310163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN +L++e+++l+++++kl+ e+
  Gorai.004G153100.3 248 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLEN 310
                         89*********************************************************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.1E-34193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.8E-28110231No hitNo description
Gene3DG3DSA:1.20.5.1702.6E-19242307No hitNo description
PfamPF001704.2E-21248310IPR004827Basic-leucine zipper domain
SMARTSM003384.0E-22248312IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.748250313IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.31E-11251307No hitNo description
CDDcd147025.69E-23253302No hitNo description
PROSITE patternPS000360255270IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGNNDEGKSK SDKSSSPVPT DQANIHVYPD WAAMQAYYGP RVTMPPYYNS AVASGHAPPP  60
YMWGPPQPMM PPYGAPYATI YSHGGVYAHP AVPITAAPVE APTKSSGNTE RGSTKKMKGF  120
DGLAMSIGNG TAENDEGAAE PRLSQSVETE GSTDGSDGNT TGTDQSRRKR SREGTPTIGG  180
DGKTEAKSNA VAVAEVTTTI SPKPIGTVLS PGMTTALELR NPSSMNAKSS PTNVPCGVMP  240
PEVWMQNERE LKRERRKQSN RESARRSRLR KQAETEELAR KVESLTAENA TLRSEINQLT  300
EKSEKLRLEN ATLVEGLKNA QLGHTQENIT NKNEDKEGEM YEKKSGAKLH QLLDASPRTD  360
AVAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264270RRSRLRK
2264271RRSRLRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475105.10.0PREDICTED: common plant regulatory factor 1-like isoform X2
SwissprotQ990891e-133CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A0D2MYP50.0A0A0D2MYP5_G
STRINGPOPTR_0002s16870.11e-161(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.14e-93G-box binding factor 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]