PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G073400.1
Common NameB456_004G073400, LOC105790648
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 205aa    MW: 22528.5 Da    PI: 7.1114
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G073400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.46.6e-40141141100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkCa+dCv+apyf++eq p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeAear+rdPvyG+v++i++lqqq+++l
  Gorai.004G073400.1  14 PCGACKFLRRKCASDCVFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAEARIRDPVYGCVAHIFALQQQVACL 104
                         7*************************99*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +a+l ++k++
  Gorai.004G073400.1 105 QAQLMQIKAQ 114
                         ****999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.91413115IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-3814112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MASSSSSTTG TGSPCGACKF LRRKCASDCV FAPYFCSEQG PARFAAIHKV FGASNVSKLL  60
LHIPAHDRCE AVVTIAYEAE ARIRDPVYGC VAHIFALQQQ VACLQAQLMQ IKAQLAQNDM  120
NSSHNIVENQ WQENLSGTVP SYMNPISPQS SLESVELNSG DSVNLQEIQS RHEEFCFQGY  180
HKKRLNNNSD LGELQTLALR MMRN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473810.11e-153PREDICTED: LOB domain-containing protein 16-like isoform X1
SwissprotQ9SLB79e-80LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A0D2RUW51e-153A0A0D2RUW5_G
STRINGPOPTR_0005s24320.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.12e-64lateral organ boundaries-domain 16
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]