PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G073300.1
Common NameB456_004G073300, LOC105793552
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 230aa    MW: 25095.9 Da    PI: 6.8924
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G073300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.32.9e-3971071100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp ++r++a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l
  Gorai.004G073300.1   7 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPLSDRSEAALTISYEAQARLHDPIYGCVSHIFALQQQVVNL 97 
                         7*************************89*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +a+la+lk++
  Gorai.004G073300.1  98 QAQLASLKAQ 107
                         *****99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.2536108IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-377105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTGCGSPCGA CKFLRRKCVR GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLAHLPLSD  60
RSEAALTISY EAQARLHDPI YGCVSHIFAL QQQVVNLQAQ LASLKAQAAQ SIANGSVTAN  120
PNDKYHGKLH NLQDVQTWFH PNDSSMAPNF NPNLSTSSYG LSDRTSSLGN FENSVISSGS  180
DDYVSFNTNF EDAPRSMSPF DMQTHNRQWT NFQDVDDLQA MALGYAQHS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477903.11e-173PREDICTED: LOB domain-containing protein 29-like
SwissprotQ9M2J73e-67LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A0D2QTD21e-173A0A0D2QTD2_G
STRINGPOPTR_0002s04200.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.14e-54LBD family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]