PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G063800.1
Common NameB456_004G063800, LOC105793536
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 168aa    MW: 19419.7 Da    PI: 6.1514
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G063800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.41e-1573125557
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                         +++rr+++NRe+ArrsR RK+  ++eL   v  L +eN++L+++l++ ++  +
  Gorai.004G063800.1  73 RKQRRMISNRESARRSRMRKQRHLDELWSQVVWLRNENHQLIDKLNHVSESHD 125
                         689***************************************99999887655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.880.108.1E-53687IPR008917Transcription factor, Skn-1-like, DNA-binding domain
SMARTSM003381.4E-1469133IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.58871134IPR004827Basic-leucine zipper domain
PfamPF001702.3E-1373125IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.05E-1373123No hitNo description
CDDcd147026.21E-1974125No hitNo description
PROSITE patternPS0003607691IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.0E-1288146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MQPSEISGLQ YIVPSNPSPY SVPAFELSRF SNPLHNLYIP PQLQEIISPH PSCINNSTSD  60
EADEQQLCVI NERKQRRMIS NRESARRSRM RKQRHLDELW SQVVWLRNEN HQLIDKLNHV  120
SESHDKVVEE NVQLKEEASQ LRRMLSDVQL TSPYSPLTDL EHALADN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18592RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00389DAPTransfer from AT3G30530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477888.11e-119PREDICTED: basic leucine zipper 43-like
SwissprotQ9FMC24e-45BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A0D2R0281e-119A0A0D2R028_G
STRINGPOPTR_0017s14490.11e-72(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-51basic leucine-zipper 42
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]