PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G185700.3
Common NameB456_003G185700, LOC105789386
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 401aa    MW: 42660.8 Da    PI: 6.7512
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G185700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.93.9e-22300362163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L++e++++k e+++l +e+
  Gorai.003G185700.3 300 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENASLRSEANRIKSEYEQLLAEN 362
                         89*********************************************************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.1E-25494IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165968.7E-49133267No hitNo description
Gene3DG3DSA:1.20.5.1705.8E-17293358No hitNo description
SMARTSM003382.6E-21300364IPR004827Basic-leucine zipper domain
PfamPF001701.7E-20300362IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.047302365IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.06E-11303359No hitNo description
CDDcd147028.59E-24305355No hitNo description
PROSITE patternPS000360307322IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDKTAQEKEP KTLPASSSQE PSSTTNSAGP ANGDWSGFQQ AYSPIPPHGF LASSPQAPPY  60
MWGVQHIIPP YGTPPHPYVA MYPHGGIYAH PSIPPGSYPF SPFAMPSPNG IVEASGNTPG  120
NMEADGKPSD VKEKLPIKRS KGSLGSLNMI TGKNNNLGKE SGASANGAYS RSAESGSEGT  180
SEGSEENSHN DSHLKSGGRQ DSGEGEASQN GNSAHGPQNG GANTMVSTAL PIVPISTAVA  240
TTAVPGPTTN LHIGMDYWGS PASSTIPAMR GKVPPTPVAG GIVTPASRDS VQSQIWLQDE  300
RELKRQRRKQ SNRESARRSR LRKQAECDEL AQRAEVLKEE NASLRSEANR IKSEYEQLLA  360
ENTSLKERLK EIPGHEDLNS SRNDQHTNND KQIEQVQGSQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316322RRSRLRK
2316323RRSRLRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472217.10.0PREDICTED: transcription factor HBP-1a isoform X1
RefseqXP_012472218.10.0PREDICTED: transcription factor HBP-1a isoform X1
SwissprotQ501B21e-167BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A0D2RPY60.0A0A0D2RPY6_G
STRINGPOPTR_0003s09630.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-147basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]