PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G003900.2
Common NameB456_003G003900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 163aa    MW: 18944.7 Da    PI: 9.282
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G003900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM147.57e-46111392128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdke 91 
                          pGfrFhPt+eelv++yLk+ v gk+l + ++i  ++iy++ PwdLp ++k +e+ewyfF++rd+++ + gk++nr+t++gyWkatg+d++
  Gorai.003G003900.2  11 LPGFRFHPTEEELVNYYLKETVLGKNLYC-DIIGFLNIYNHYPWDLPGMAKIGEREWYFFVQRDTRSGHgGKKPNRTTERGYWKATGSDRQ 100
                         69************************999.99***************888999***********9999758899***************** PP

                 NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + +    +  +gl+ktLvfy+g+ap+g++tdWvm+eyrl
  Gorai.003G003900.2 101 IRRLtePKIIMGLRKTLVFYTGKAPNGNRTDWVMNEYRL 139
                         *9874455569**************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-4910144IPR003441NAC domain
PROSITE profilePS5100547.86410156IPR003441NAC domain
PfamPF023652.3E-2612139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MENIISPEII LPGFRFHPTE EELVNYYLKE TVLGKNLYCD IIGFLNIYNH YPWDLPGMAK  60
IGEREWYFFV QRDTRSGHGG KKPNRTTERG YWKATGSDRQ IRRLTEPKII MGLRKTLVFY  120
TGKAPNGNRT DWVMNEYRLS DTSILRVQTI CSSTELTNLL MS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-391016115162Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472520.0KC847252.1 Gossypium hirsutum NAC domain protein NAC75 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469247.11e-107PREDICTED: protein CUP-SHAPED COTYLEDON 1-like isoform X1
SwissprotQ10S653e-67NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A0D2NUE11e-117A0A0D2NUE1_GOSRA; Uncharacterized protein
STRINGGorai.003G003900.11e-106(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.16e-67NAC domain containing protein 36
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]