PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G003900.1
Common NameB456_003G003900, LOC105787414
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 229aa    MW: 26514 Da    PI: 8.4171
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G003900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1462e-45111392128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdke 91 
                          pGfrFhPt+eelv++yLk+ v gk+l + ++i  ++iy++ PwdLp ++k +e+ewyfF++rd+++ + gk++nr+t++gyWkatg+d++
  Gorai.003G003900.1  11 LPGFRFHPTEEELVNYYLKETVLGKNLYC-DIIGFLNIYNHYPWDLPGMAKIGEREWYFFVQRDTRSGHgGKKPNRTTERGYWKATGSDRQ 100
                         69************************999.99***************888999***********9999758899***************** PP

                 NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + +    +  +gl+ktLvfy+g+ap+g++tdWvm+eyrl
  Gorai.003G003900.1 101 IRRLtePKIIMGLRKTLVFYTGKAPNGNRTDWVMNEYRL 139
                         *9874455569**************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-5210157IPR003441NAC domain
PROSITE profilePS5100552.47310157IPR003441NAC domain
PfamPF023656.5E-2612139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MENIISPEII LPGFRFHPTE EELVNYYLKE TVLGKNLYCD IIGFLNIYNH YPWDLPGMAK  60
IGEREWYFFV QRDTRSGHGG KKPNRTTERG YWKATGSDRQ IRRLTEPKII MGLRKTLVFY  120
TGKAPNGNRT DWVMNEYRLS DTSILREDIV LCKIYRKATS LRVFEQRAEE QALSSYVAQN  180
NNITVPLPLQ HHDYGTNMAQ ADSDEHGPSS YSAWTTMTEC FTQSKKNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-411015715168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472520.0KC847252.1 Gossypium hirsutum NAC domain protein NAC75 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469247.11e-173PREDICTED: protein CUP-SHAPED COTYLEDON 1-like isoform X1
SwissprotQ10S651e-77NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A0D2MHI21e-172A0A0D2MHI2_GOSRA; Uncharacterized protein
STRINGGorai.003G003900.11e-173(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38992860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.15e-83NAC domain containing protein 36
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]