PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G243900.1
Common NameB456_002G243900, LOC105786380
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 438aa    MW: 49886.3 Da    PI: 5.7433
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G243900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.25.1e-2491198186
            trihelix   1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                         +Wt+++v++Li a+ +++++  +++                     +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++e+ +k
  Gorai.002G243900.1  91 KWTDNMVRLLIMAVYYIGDDQASSEggnnndpsgkkkggggsggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNEILGK 181
                         7**************9888887766667888999999999*************************************************** PP

            trihelix  71 r.tsessstcpyfdqle 86 
                         + ++e++++ +++++++
  Gorai.002G243900.1 182 GtACEVVENQRLLESMD 198
                         *55**********9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.2E-2289223No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MLGLEMPLHP QPQQQPQNPQ SVQNPHSLHH QQQHPQVVAY AHHETQHVKQ GYHPFGSKPK  60
QISTISDEDE PGFTLDDGGS KRKASPWQRM KWTDNMVRLL IMAVYYIGDD QASSEGGNNN  120
DPSGKKKGGG GSGGLLQKKG KWKSVSRAMM EKGFYVSPQQ CEDKFNDLNK RYKRVNEILG  180
KGTACEVVEN QRLLESMDLS PKMKDEVKKL LNSKHLFFRE MCAYHNSCGH VTQEVANETP  240
PQMQQRCLHS SDNAQIGGNP AGGSTETLKL EESDDEDDDD DDDESDGDDD DDDDETMDGH  300
DEDQNVENSS RKRPRKGGVS PSMQQLSNEV TKVIQDGSKN SWEKKHWLKM KLMQLEEQEV  360
SYQCEAFELE KQRLKWVKFS GKKEREMEKS KLENQRKRLE NERMVLIVRQ QELELVDMSD  420
VRQHASNKRG DLSSFTS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6230810.0JX623081.1 Gossypium hirsutum clone NBRI_GE70112 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468221.10.0PREDICTED: 46 kDa FK506-binding nuclear protein-like isoform X1
RefseqXP_012468222.10.0PREDICTED: 46 kDa FK506-binding nuclear protein-like isoform X2
TrEMBLA0A0D2NSB00.0A0A0D2NSB0_GOSRA; Uncharacterized protein
STRINGGorai.002G243900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-104sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]