PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G237900.1
Common NameB456_002G237900, LOC105786322
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 285aa    MW: 31725.8 Da    PI: 6.7022
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G237900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.41e-3138145199
                         EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                         f+k ltpsdv+k++rlv+pk++ae+h         + + +++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+++F
  Gorai.002G237900.1  38 FEKPLTPSDVGKLNRLVIPKQHAEKHfplggsggdSVVDNKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDIILF 128
                         99****************************99887444558889*********************************************** PP

                         EE-SSSEE..EEEEE-S CS
                  B3  83 kldgrsefelvvkvfrk 99 
                         k+++ + ++l+++++r+
  Gorai.002G237900.1 129 KRHRLNAERLFIGWRRR 145
                         *75559999*****997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-4031146IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-3034143IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-2836136No hitNo description
SMARTSM010191.8E-2538146IPR003340B3 DNA binding domain
PfamPF023621.6E-2838145IPR003340B3 DNA binding domain
PROSITE profilePS5086313.47938146IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEPTQSYQPS MSFFSNIPSS HIEDEYEQFD DHEKEPMFEK PLTPSDVGKL NRLVIPKQHA  60
EKHFPLGGSG GDSVVDNKGL LLSFEDESGK CWRFRYSYWN SSQSYVLTKG WSRYVKEKQL  120
DAGDIILFKR HRLNAERLFI GWRRRGAALD GGNAELGNNS GGVRGGDNGG WSSSRGLYQG  180
NPYPGHIQGQ CHGANVPYQH DCLHAGSMAE NQGPGGNPKR LLRLFGVNLE CHLDDSSEPS  240
TPDSSSVSSQ GPTSTHHFYS QSYTSNYMDI GFSRDMNQMN NHRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-483515111124DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468154.10.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ29e-70Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A0D2QI580.0A0A0D2QI58_G
STRINGVIT_08s0007g02810.t011e-103(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.15e-66B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]