PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G228200.2
Common NameB456_002G228200, LOC105786219
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 471aa    MW: 52693.6 Da    PI: 7.9884
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G228200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.68.2e-11178213540
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                         k  rr+++NReAAr+sR+RKka++++Le     L++
  Gorai.002G228200.2 178 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLTQ 213
                         7789***********************985555444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-8171220No hitNo description
SMARTSM003381.0E-8174247IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.266176220IPR004827Basic-leucine zipper domain
CDDcd147081.92E-22178230No hitNo description
PfamPF001705.1E-8178215IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-7178220No hitNo description
PROSITE patternPS000360181196IPR004827Basic-leucine zipper domain
PfamPF141443.9E-31269342IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MATSRSNMNH SIQLDHHHHH QNQDHHQSHQ IPYAMMQSSS SSSIPANFVS KETGAYDLGE  60
LDQALFLYLD GQDPSTIQDQ RHHSSGIKPP TLNIFPSQPM HVEPPSSTKT SRGLVSPSTS  120
GSKRPSEPSM ELANPRTDNI ASASAPNQPP KAVKREGNRK GPTTSSSEQE GPKTPDPKTL  180
RRLAQNREAA RKSRLRKKAY VQQLESSRIR LTQLEQELQR ARAQGMFFGG GNMLGGEQGL  240
PVGINNISSE AAVFDMEYGR WVEEHHRLMC ELRAAVQEHL PENELRMYVD NCLAHFDEVM  300
NLKGMAAKTD VFHLVSGMWK TPAERCFMWI AGFRPSHLIK VILNQIEPLT EQQIMGICAL  360
QQSTQEAEEA LSQGLEALNQ SLSDIIISDS LSCPSNMSNY MGQMAIAINK LSTLEGFVRQ  420
ADNLRHQAIH RLHQILTIRQ AARCLLAIAE YFHRLRALSS LWLARPRQEQ *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468015.10.0PREDICTED: transcription factor TGA2-like isoform X2
SwissprotQ415581e-130HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A0D2RB020.0A0A0D2RB02_G
STRINGVIT_08s0007g06160.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-174bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]