PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G228200.1
Common NameB456_002G228200, LOC105786219
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 472aa    MW: 52821.7 Da    PI: 7.9884
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G228200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.68.3e-11179214540
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                         k  rr+++NReAAr+sR+RKka++++Le     L++
  Gorai.002G228200.1 179 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLTQ 214
                         7789***********************985555444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-8172221No hitNo description
SMARTSM003381.0E-8175248IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.266177221IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-7179221No hitNo description
CDDcd147082.67E-22179231No hitNo description
PfamPF001705.1E-8179216IPR004827Basic-leucine zipper domain
PROSITE patternPS000360182197IPR004827Basic-leucine zipper domain
PfamPF141443.9E-31270343IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MATSRSNMNH SIQLDHHHHH QNQDHHQSHQ IPYAMMQSSS SSSIPANFVS KETGAYDLGE  60
LDQALFLYLD GQDPSTIQDQ RHHSSGIKPP TLNIFPSQPM HVEPPSSTKT SRGLVSPSTS  120
GSKRPSEPSM ELANPRTDNI ASASAPNQPP KAVKQREGNR KGPTTSSSEQ EGPKTPDPKT  180
LRRLAQNREA ARKSRLRKKA YVQQLESSRI RLTQLEQELQ RARAQGMFFG GGNMLGGEQG  240
LPVGINNISS EAAVFDMEYG RWVEEHHRLM CELRAAVQEH LPENELRMYV DNCLAHFDEV  300
MNLKGMAAKT DVFHLVSGMW KTPAERCFMW IAGFRPSHLI KVILNQIEPL TEQQIMGICA  360
LQQSTQEAEE ALSQGLEALN QSLSDIIISD SLSCPSNMSN YMGQMAIAIN KLSTLEGFVR  420
QADNLRHQAI HRLHQILTIR QAARCLLAIA EYFHRLRALS SLWLARPRQE Q*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468014.10.0PREDICTED: transcription factor TGA2-like isoform X1
SwissprotQ415581e-130HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A0D2QAL30.0A0A0D2QAL3_G
STRINGVIT_08s0007g06160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72072843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-173bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]