PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G215000.1
Common NameB456_002G215000, LOC105786082
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 550aa    MW: 57867.3 Da    PI: 7.2398
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G215000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.67.5e-411702753114
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 
                         + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  + s +ss+s+ s++    
  Gorai.002G215000.1 170 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSTLSAP---- 256
                         5699****************************************************************9997777777777744444.... PP

                 TCP  93 saakskksqksaasalnlakes 114
                            +sk++++s + al+la ++
  Gorai.002G215000.1 257 ---PSKSAPHSFHGALALASHH 275
                         ...3333333333333333322 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.1E-39174274IPR005333Transcription factor, TCP
PROSITE profilePS5136928.496175229IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MELTDLQSNK QTKNNSSSSN NNNNNSAEPH HQSLQQHHLQ HQKQSASPQL VVPFDGTRSS  60
GPSSGNPFNM GSISHLHPHH PFHHLLLHPA SSTTTTTTTP PLPSSSTSSS SSSSASTTTT  120
NPPQLVDASL AIATRSTSLN IDSKNQTDLP ISSTTTPAST TTTTTTANPP VKRSTKDRHT  180
KVDGRGRRIR MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIIAAT GTGTIPANFS  240
TLNISLRSSG STLSAPPSKS APHSFHGALA LASHHHHHHP YEEGFAHSAL LGFQQQHLLT  300
ADQIAEALPG GGGGDGGNLS ENYMRKRFRE DLFKDDDQQQ GESGSGGGDG SPIKAFKSGL  360
TQLSKPQQDA GSSALPRPSN ILPGTAMWAV APAPSSGAGS TFWMLPMSAG AGGPSVAPSA  420
ATGAGPSDHP QMWPFGTANQ ASGNTLQAPL HFLPRFNLPG NVEFQGGRAS PLQLGSMLMQ  480
QQQQQQQPHH HLGLGMSDSN LGMLAALNAY SRGGSNVNSD QNNPLEHHHQ QHQPQGTDSG  540
DDQDPNTSQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5274910.0HQ527491.1 Gossypium herbaceum clone NBRI_C_7085 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467806.10.0PREDICTED: transcription factor TCP8
TrEMBLA0A0D2QGT80.0A0A0D2QGT8_GOSRA; Uncharacterized protein
STRINGGorai.002G215000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.17e-60TCP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]