PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G126500.1
Common NameB456_002G126500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 188aa    MW: 21752.6 Da    PI: 7.7666
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G126500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.22.7e-1163116558
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                         ++ +r+++NRe+ArrsR RK+++++ L      L + N +    ++ ++ ++ +
  Gorai.002G126500.1  63 RKRKRMESNRESARRSRMRKQKYLDDLMAQLTLLRKDNNQILTSINFITHHYFN 116
                         5789**********************************9998888877766655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.9E-1859123IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.27761124IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-963135No hitNo description
SuperFamilySSF579595.63E-1263116No hitNo description
PfamPF001701.9E-963115IPR004827Basic-leucine zipper domain
CDDcd147028.28E-1864114No hitNo description
PROSITE patternPS0003606681IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSPVVSEILR SGFMINSSLR RRTHLVQSFS VVFLHCGNSN SSGSTLLQIS GSEEDLHRLM  60
DERKRKRMES NRESARRSRM RKQKYLDDLM AQLTLLRKDN NQILTSINFI THHYFNIEAE  120
NSVLRAQFME LSQRLDSLNH ILNYLNDPTL NNGIWVYETE PFETSADSFT NFTLNQPIVA  180
SADIFQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16283RKRKRMESNRESARRSRMRKQK
27582RRSRMRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466317.11e-108PREDICTED: ocs element-binding factor 1-like
TrEMBLA0A0D2MA611e-137A0A0D2MA61_G
STRINGPOPTR_0005s25290.15e-56(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-43basic leucine-zipper 44
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]