PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G036700.1
Common NameB456_002G036700, LOC105775770
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 321aa    MW: 36405.1 Da    PI: 9.0092
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G036700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.55.4e-49221552128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          pGfrFhPtdeelv +yLk+kve+k+l++ e ik++diyk++PwdLpk  +v + +e+e yfF+kr +ky+++ r+nr+t sg+Wkatg d
  Gorai.002G036700.1  22 LPGFRFHPTDEELVGFYLKRKVEKKPLRF-ELIKQIDIYKFDPWDLPKasMVGGgGESESYFFCKRGRKYRNSVRPNRVTGSGFWKATGID 111
                         59*************************99.99***************5343333366699******************************* PP

                 NAM  90 kevlskkgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                         k+v++++g +     +glkktLv+y+g a kg+ktdW+mhe+rl
  Gorai.002G036700.1 112 KPVYAQTGDHqglacIGLKKTLVYYRGAAGKGTKTDWMMHEFRL 155
                         *****9444346677***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100551.15921188IPR003441NAC domain
SuperFamilySSF1019411.03E-5122188IPR003441NAC domain
PfamPF023651.7E-2523155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MMTVDDVQGV NDNKADHEDI QLPGFRFHPT DEELVGFYLK RKVEKKPLRF ELIKQIDIYK  60
FDPWDLPKAS MVGGGGESES YFFCKRGRKY RNSVRPNRVT GSGFWKATGI DKPVYAQTGD  120
HQGLACIGLK KTLVYYRGAA GKGTKTDWMM HEFRLPYPHE STTVVAFSNP KFAAQEAEVW  180
TICRIFKRNS SLKKHKQDWR QITAKRASLT TAPTSQTCSV ESKSNVQGKY ITFGSPFIVD  240
YHQYHNDEEK PSMLVNHHNI SGKNQSQWHV TDRMSSAATA QIPSSMAASS SSFSNDDFFT  300
EANWDELKSV VEFALEPFPM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-452319419171NO APICAL MERISTEM PROTEIN
1ut4_B1e-452319419171NO APICAL MERISTEM PROTEIN
1ut7_A1e-452319419171NO APICAL MERISTEM PROTEIN
1ut7_B1e-452319419171NO APICAL MERISTEM PROTEIN
3swm_A1e-452319422174NAC domain-containing protein 19
3swm_B1e-452319422174NAC domain-containing protein 19
3swm_C1e-452319422174NAC domain-containing protein 19
3swm_D1e-452319422174NAC domain-containing protein 19
3swp_A1e-452319422174NAC domain-containing protein 19
3swp_B1e-452319422174NAC domain-containing protein 19
3swp_C1e-452319422174NAC domain-containing protein 19
3swp_D1e-452319422174NAC domain-containing protein 19
4dul_A1e-452319419171NAC domain-containing protein 19
4dul_B1e-452319419171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472190.0KC847219.1 Gossypium hirsutum NAC domain protein NAC42 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453711.10.0PREDICTED: transcription factor JUNGBRUNNEN 1
SwissprotQ9SK551e-81NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0D2NHT90.0A0A0D2NHT9_GOSRA; Uncharacterized protein
STRINGGorai.002G036700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.16e-82NAC domain containing protein 42
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  3. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  4. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  5. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  6. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]