PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G003000.2
Common NameB456_002G003000, LOC105772694
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 266aa    MW: 28593.7 Da    PI: 6.0365
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G003000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_123.89.5e-0888136351
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                         e k  +r   NReA r++Rq+ ka+ + Le++v  L + N++L k+l+ 
  Gorai.002G003000.2  88 EKKPKKRSLGNREAVRKYRQKVKARAASLEDEVVRLRTLNQQLLKRLQG 136
                         668889999***********************************99974 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-1185154No hitNo description
SMARTSM003383.8E-686153IPR004827Basic-leucine zipper domain
CDDcd146866.49E-1087145No hitNo description
PfamPF077164.6E-1288143IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.61E-690136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDEGELDFSN HEVFSGGNSM GDIPSSCSMD SFFNEILNDS HACTHTHTCN PPGPDNSHTH  60
TCFHVHTKIV PASTEDEAAA DDTEGSREKK PKKRSLGNRE AVRKYRQKVK ARAASLEDEV  120
VRLRTLNQQL LKRLQGQAAL EAEIARLKCL LVDVRGRIEG EIGSFPYQKP TANNVNTLNL  180
PGAYLMNPCN IQCNDQMYCL QPEVEGNTGE ATALDGHGFN GCEFDDIQCL ASQNSGAKEL  240
PGGGVGSAAS NGNSSGTKRR KATAG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3550300.0DQ355030.1 Gossypium hirsutum putative retinoblastoma binding protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449579.10.0PREDICTED: uncharacterized protein LOC105772694 isoform X2
SwissprotQ8GTS21e-110BZP23_ARATH; Basic leucine zipper 23
TrEMBLA0A0D2Q5X90.0A0A0D2Q5X9_G
STRINGVIT_03s0038g02420.t011e-134(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.11e-106bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]