PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G274500.1
Common NameB456_001G274500, LOC105769867
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 246aa    MW: 27879 Da    PI: 10.0445
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G274500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM111.69e-35141391128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdk 90 
                         +p G+rF+Ptdeelvv+yLk+k+ + +l++ +vi+e+d+++++Pw+Lp  v   +++ yfFs+r  + +++k+++r ++ sgyWk  gk+k
  Gorai.001G274500.1  14 MPIGYRFRPTDEELVVHYLKRKALNLPLPA-SVIPEFDVFQTDPWSLPGDV---KEKRYFFSSRYGNDSNNKKRKRvVAGSGYWKPIGKEK 100
                         699***************************.99***************554...4578******9999999999997888*********** PP

                 NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++l++ ++++vg+++ L+f + +  + +k +W++h++rl
  Gorai.001G274500.1 101 PILASgTNQVVGMRQALIFCERKLCTDTKPRWLLHQFRL 139
                         ***9967778***********999999**********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-4110164IPR003441NAC domain
PROSITE profilePS5100541.5814165IPR003441NAC domain
PfamPF023651.7E-1915139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEGQRFVVNG GIKMPIGYRF RPTDEELVVH YLKRKALNLP LPASVIPEFD VFQTDPWSLP  60
GDVKEKRYFF SSRYGNDSNN KKRKRVVAGS GYWKPIGKEK PILASGTNQV VGMRQALIFC  120
ERKLCTDTKP RWLLHQFRLV GSADQTQMTK REWHGDWVVF KVIQRKRNAK KHGVICSNSQ  180
TTRAAAYMPS CIDFTVEDSS MFGPPQPTSP SSSEITEVSP NGLLDQEESS AAVITTFLHY  240
CMRKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-301217115171NO APICAL MERISTEM PROTEIN
1ut4_B9e-301217115171NO APICAL MERISTEM PROTEIN
1ut7_A9e-301217115171NO APICAL MERISTEM PROTEIN
1ut7_B9e-301217115171NO APICAL MERISTEM PROTEIN
4dul_A9e-301217115171NAC domain-containing protein 19
4dul_B9e-301217115171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.19011e-107flower| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5893851e-41JX589385.1 Gossypium hirsutum clone NBRI_GE24075 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446267.10.0PREDICTED: NAC transcription factor ONAC010
TrEMBLA0A0D2PXL40.0A0A0D2PXL4_GOSRA; Uncharacterized protein
STRINGGorai.001G274500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-45NAC domain containing protein 83
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]