PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G139700.2
Common NameB456_001G139700, LOC105794408
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 410aa    MW: 46835.6 Da    PI: 5.6074
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G139700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.24e-22111204185
            trihelix   1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 
                         +W+++ v++Li++++ ++++ + +         +kk +W+ vsk m ++g+++sp+qC++k+++lnkrykk++++ +++ ++++++++++ 
  Gorai.001G139700.2 111 KWKDNVVRLLIAVVSCVGDEEGVEGlkrksrilQKKEKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCRVVENHSLM 201
                         7**************555544432112334566**********************************************669******999 PP

            trihelix  83 dql 85 
                         d++
  Gorai.001G139700.2 202 DSM 204
                         998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.5E-19109231No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDDSGLECGF LSGPNGGLFD LESPIQREQR PQNHMVMMTD LGNEHRSTGL TEAKGSSQKG  60
FPMNFGKGKG ISPVIAITDG SMSDEDEPSY NEDGNREKCK GKNGWPWKRM KWKDNVVRLL  120
IAVVSCVGDE EGVEGLKRKS RILQKKEKWK TVSKIMISKG CHVSPQQCED KFNDLNKRYK  180
KLNDILGRGT SCRVVENHSL MDSMPHLSQK AKDDVKKILN SKHLFYQEMC AYHNGQSIPN  240
CQDLDLQGCI PSERCLDNNG SDEEEADSED DDDNDVDDDD DDYAVCEEER MGEVKERKKA  300
SAECGGQDGF KFQEGTRSSM VGKDRIKRQM VQLQEERVKL QTEAFELEKQ RFKWVQYCSK  360
KDRELERLRL EKERRRMENE QSILQLRRKV VEVGSLGIDR QSQIDMCSH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479025.10.0PREDICTED: uncharacterized protein LOC105794408
TrEMBLA0A0D2LYM00.0A0A0D2LYM0_GOSRA; Uncharacterized protein
STRINGGorai.001G139700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.14e-63sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]