PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G122100.3
Common NameB456_001G122100, LOC105792684
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 342aa    MW: 38314.8 Da    PI: 9.205
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G122100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.7e-103778445
                        XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                         k  rr+++NReAA++sR+RKka++++Le    +L++  ++L
  Gorai.001G122100.3 37 AKTLRRLAQNREAAKKSRLRKKAYVQQLESSRIKLTQLEQEL 78
                        6889*************************8766666655544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.4E-43492IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.1513680IPR004827Basic-leucine zipper domain
PfamPF001701.3E-73778IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-63881No hitNo description
Gene3DG3DSA:1.20.5.1707.2E-83982No hitNo description
PROSITE patternPS0003604156IPR004827Basic-leucine zipper domain
PfamPF141442.1E-30119194IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MASDPSRTGT SLNQSAPIVK PLQEKKRAST SEKQLDAKTL RRLAQNREAA KKSRLRKKAY  60
VQQLESSRIK LTQLEQELQR ARSQGLLLGS SGGGVGNISS GAVICDMEYA RWLEDDERHM  120
SELRTGLHSN LSDTDLRLMV NTYLSHYDEI FRLKGMAAKF DVFHLLTGMW TSPAERCFLW  180
MGGFRPSELI KILISQLDPL TEQQLMGICS LQHSSQQAEE ALSQGLEQLQ QSLIDTVAGG  240
PAIDGMQQMA IALSKLANLE GFVRQADNLR QQTLHQLPRI LTVRQAARCF LVIGEYYGRL  300
RALSSLWASR PRGRLMSDEQ PCQTTTELQM VQPSQSHFAH F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476845.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X2
SwissprotO241601e-131TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A0D2LXU00.0A0A0D2LXU0_G
TrEMBLA0A0D2N8M60.0A0A0D2N8M6_G
TrEMBLA0A0D2PXS30.0A0A0D2PXS3_G
STRINGPOPTR_0009s16590.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-165bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]