PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G076700.2
Common NameB456_001G076700, LOC105788111
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 267aa    MW: 30361.1 Da    PI: 8.054
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G076700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP91.71.6e-2844117373
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...sec 73 
                         g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ k  +++l+ +++ ++   + c
  Gorai.001G076700.2  44 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLNQPSKVIDWLLEATKDDVDKLPPLEFHHSlmpNPC 117
                         79************************************************************966666443333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-2645111IPR005333Transcription factor, TCP
PROSITE profilePS5136928.56545103IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MISSSREKSC FEAKQEGDGG KVSSSRQWQG FRNPRIVRVS RSFGGKDRHS KVCTIRGLRD  60
RRIRLSVPTA IQLYDLQDRL GLNQPSKVID WLLEATKDDV DKLPPLEFHH SLMPNPCQSS  120
PFTPLMDPNL MFMKDYEGET SMQVEREITD MKGKWIKEQE KLIFPVTNHG SSLPGGFMFN  180
TGTNSMPLNT YNHHWNPSQF TNHGFHHHHQ PENYFHGAIA NTYPPLPSCP PPSTTPSHFP  240
TFPWYGTNTN QDAAGDQDNS KLQFFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2050104155Putative transcription factor PCF6
5zkt_B7e-2050104155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6208972e-65JX620897.1 Gossypium hirsutum clone NBRI_GE67264 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470301.10.0PREDICTED: transcription factor TCP5-like
RefseqXP_012470307.10.0PREDICTED: transcription factor TCP5-like
TrEMBLA0A0D2PN310.0A0A0D2PN31_GOSRA; Uncharacterized protein
STRINGGorai.001G076700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.13e-50TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]