PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G004200.1
Common NameB456_001G004200, LOC105781587
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 351aa    MW: 41217.9 Da    PI: 4.2273
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G004200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.91.1e-1299183286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         Wt+qe+ +L+e+  ++  +l+r++l++ +W ++++k+  + +  ++  qC+  ++ l++++kk+k  +++    +ss++++f+++e
  Gorai.001G004200.1  99 WTQQEIYVLLEVWGNRFLQLGRRSLRGEDWVDIAEKVsDALKSMKNEAQCRRMIDGLKRKFKKEKSKAERM-GLNSSKWVFFRKME 183
                         *************************************77889999*********************99986.89999********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-1598184No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDGVEPYSFN RHPQYPRSTR TRHVYSYGPD EELDDEEEME LDNEDVDDDN DDDPDVYYHR  60
VKESERFERY PKRQKVRTSV PSFQYAPDHR DSLKNAYDWT QQEIYVLLEV WGNRFLQLGR  120
RSLRGEDWVD IAEKVSDALK SMKNEAQCRR MIDGLKRKFK KEKSKAERMG LNSSKWVFFR  180
KMEMLMGLGS SSFRQQESWL ACGVDSGEFV FMNPQVYLDR SNGFDEMRDS PAESEIDDDD  240
DDGEEADGGS MKVDVNDERS LRMLADSVQR FGKIYEKIES SKREHMKELE KMRMDFQKEL  300
EVQKQQILER AQAEIAKMKE EDDDDDDDDD ETDDDDDGND NGDSTENISE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9645521e-117JX964552.1 Gossypium hirsutum clone NBRI_TRANS-821 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461812.10.0PREDICTED: trihelix transcription factor ASIL2 isoform X1
TrEMBLA0A0D2LS690.0A0A0D2LS69_GOSRA; Uncharacterized protein
STRINGGorai.001G004200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97792733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.13e-84Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]