PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ44993.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family NF-YB
Protein Properties Length: 208aa    MW: 21984.2 Da    PI: 6.5294
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ44993.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB167.61.5e-5216113295
       NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse....asdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                 reqdrflPian+srimkk+lP+naki+kdaketvqecvsefisf+tse    asdkcqrekrktingddllwa++tlGfe+y+eplk+yl+k+re+e+
  KXZ44993.1  16 REQDRFLPIANISRIMKKALPGNAKIAKDAKETVQECVSEFISFITSEcvvgASDKCQREKRKTINGDDLLWAMTTLGFEEYLEPLKLYLAKFREAEA 113
                 89*********************************************977778******************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-5311148IPR009072Histone-fold
SuperFamilySSF471135.24E-3618120IPR009072Histone-fold
PfamPF008085.8E-252189IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.5E-184967No hitNo description
PRINTSPR006156.5E-187290No hitNo description
PRINTSPR006156.5E-1891109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSGDEGDGKD GNSNAREQDR FLPIANISRI MKKALPGNAK IAKDAKETVQ ECVSEFISFI  60
TSECVVGASD KCQREKRKTI NGDDLLWAMT TLGFEEYLEP LKLYLAKFRE AEAAVAKQQP  120
GGGSSAGAEA KREAAAAAAA AAAASQQQAA HQHLQAQLQG GMPFGLMPAQ FQSLPPGMMP  180
AGFPGLPLPP GMPPMMMPGG TLPKQEPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B2e-4516110494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4516110494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4g91_B1e-4516110292Transcription factor HapC (Eurofung)
4g92_B1e-4516110292Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002949581.18e-82hypothetical protein VOLCADRAFT_117284
SwissprotO233102e-60NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A150G5E61e-150A0A150G5E6_GONPE; Uncharacterized protein
STRINGEDP066439e-71(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP20231616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-60nuclear factor Y, subunit B3