PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.U025800.1.p
Common NameGLYMA_U025800, LOC100787416
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 191aa    MW: 21416.7 Da    PI: 9.1547
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.U025800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP136.77e-4370146278
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        Cq+e+C adl++ak+yhrrhkvCe+hskapvv+v+gl+qrfCqqCsrfh+l efDe+krsCrrrLa+hnerrrk+++
  Glyma.U025800.1.p  70 CQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKTNP 146
                        **************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.1E-3662131IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.75367144IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.4E-4068148IPR004333Transcription factor, SBP-box
PfamPF031105.5E-3270143IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEGRRVERKK TLFERVRKNS TVDEEVENEG EEEDESGVNI TEEEKKIGVS SGGGRRGSSG  60
GGGGVSPPSC QAERCGADLT DAKRYHRRHK VCEFHSKAPV VVVAGLRQRF CQQCSRFHDL  120
AEFDESKRSC RRRLAGHNER RRKTNPEAAN EGNSKGQHPK ETTHCRLADE RGRIQMNLTG  180
SSEYKSFNIR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-3757143184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.94480.0pod
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.U025800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358171e-146AC235817.2 Glycine max clone GM_WBa0006O01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540122.11e-136squamosa promoter-binding protein 1
RefseqXP_028193727.11e-136squamosa promoter-binding protein 1-like
SwissprotQ387414e-44SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A0B2PDS31e-135A0A0B2PDS3_GLYSO; Squamosa promoter-binding protein 1
TrEMBLI1LT751e-135I1LT75_SOYBN; Uncharacterized protein
STRINGGLYMA12G27330.11e-136(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.22e-40squamosa promoter binding protein-like 4
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]