PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.U024500.1.p
Common NameGLYMA_U024500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 141aa    MW: 16014.7 Da    PI: 10.4173
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.U024500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.61.8e-141144336
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaeva 36
                       i n+++r +tf kR++ ++KKAeEL +LC++e++
  Glyma.U024500.1.p 11 IANNTKRITTFRKRKKSLMKKAEELNTLCGIEAC 44
                       89******************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-13155IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.881142IPR002100Transcription factor, MADS-box
CDDcd002662.40E-21280No hitNo description
SuperFamilySSF554551.83E-18289IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-7323IPR002100Transcription factor, MADS-box
PfamPF003198.2E-131144IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MGRKKVKLAL IANNTKRITT FRKRKKSLMK KAEELNTLCG IEACRDKPEP EVWPSELGVL  60
SVVERFRSRP ELDQSRKKVN QESFVSQSIV KGQDRLQKVV KENKEIEMSS FMTQCLNIGN  120
VQPCKNMTTA DLNVLSSMIE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLALIANNTKRITTFRKRK
22125RKRKK
36477RFRSRPELDQSRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.U024500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2357390.0AC235739.1 Glycine max strain Williams 82 clone GM_WBb0002K19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028186497.17e-72agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-31AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A445I4H97e-97A0A445I4H9_GLYSO; Agamous-like MADS-box protein AGL80
STRINGGLYMA11G30500.21e-97(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-30AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]