PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.U019400.1.p
Common NameGLYMA_U019400, LOC100817691
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 575aa    MW: 63581.8 Da    PI: 8.5516
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.U019400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000177898323
                       ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                       C++C+k F r  nL+ H r H
  Glyma.U019400.1.p 78 CEICNKGFQRDQNLQLHRRGH 98
                       *******************88 PP

2zf-C2H2110.0013153175123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k +  +s+ k H + +
  Glyma.U019400.1.p 153 WKCDKCSKKYAVQSDWKAHSKIC 175
                        58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.7E-57598IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.37E-77598No hitNo description
SMARTSM003550.117698IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8247698IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SMARTSM0035578118148IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.3E-5141174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.37E-7148173No hitNo description
SMARTSM00355150153173IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MMSEETFSVP PPNSTIRATS LVHHHAHVQP PSPSPNPNPN PNSNPAKRRR SLPGTPDPDA  60
EVVALSPKSL MATNRFLCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRANK DQVRKKVYVC  120
PEKSCVHHDP SRALGDLTGI KKHYSRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTREY  180
KCDCGTLFSR KDSFITHRAF CDALAEESAR VTTVPAALSN LRNDHHHHLT NAQASRIPQI  240
NFSGFHSSDQ LFGGGSSEAL LANHHHHQQQ KLRLPLWLDH HQVNNNPQVL HHHTLNNFST  300
KPNGFTTNSG SGPNSVTDLV QTMDMFGSQT EFVNYRYPEA SFGGGNANVS VLPPHELKQE  360
QEENKEHLSH SGASYNNLYL SSSDIQNPPP HHHHYMSATT LLHKAVQMGS SRLMNDNVFG  420
SILGTTTTNS NNNNVVVEVQ KLNELVSVEA AGCTNNNLGG GYLLNDSNNS NSFVVVNGTN  480
KGGGLEHMVM PVDEETQQAS IMGKQLHSSL SSNNKNQQLG LTRDFLGVGD HNNSIDSIRR  540
PFLQQDLVEF NAMGSASASA SVMNLQSQYG GHYC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-36149214368Zinc finger protein JACKDAW
5b3h_F3e-36149214368Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102115KLKQRANKDQVRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.U019400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-154AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539112.20.0protein indeterminate-domain 9
TrEMBLA0A445I2240.0A0A445I224_GLYSO; Protein indeterminate-domain 9
STRINGGLYMA11G15950.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-103C2H2-like zinc finger protein