PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.U013000.1.p
Common NameGLYMA_U013000, LOC102667813
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 208aa    MW: 23558.1 Da    PI: 8.9067
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.U013000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.41.8e-131149341
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                       i+n  +r++tf kR+ng lKK  E+ +L d++++ ii+ 
  Glyma.U013000.1.p 11 INNPLKRKTTFKKRKNGFLKKVDEITTLSDIRACAIIYT 49
                       8999*********************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.33E-18181IPR002100Transcription factor, MADS-box
SMARTSM004327.6E-13160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.928149IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-6323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-111149IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MARKKLRHTY INNPLKRKTT FKKRKNGFLK KVDEITTLSD IRACAIIYTL DEPEPKVWPS  60
NQGLESVISR FRGVSELAQS KRMLCQENLL KRNIMKAQGK LMNEIKKKEI GLFMCQYFAS  120
WNNLDNANII DQNDITLLAN KKLEITKKNE ILQVQEVTPA IENGGETMTE GEQTLVANVD  180
AMPNLNWSND NIDDGDGDGI DVKIGRC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKLRHTYINNPLKRKTTFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.U013000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006591590.11e-152agamous-like MADS-box protein AGL80
RefseqXP_028186315.11e-152agamous-like MADS-box protein AGL80
TrEMBLA0A445I2N21e-150A0A445I2N2_GLYSO; Agamous-like MADS-box protein AGL80
STRINGGLYMA11G17832.11e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1699628
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-27AGAMOUS-like 80