PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G232400.1.p
Common NameGLYMA_20G232400, LOC100785287
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 264aa    MW: 29182.1 Da    PI: 6.7207
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G232400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.51.1e-54781802101
                NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                          l++fw++q   i+k+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi
  Glyma.20G232400.1.p  78 LQAFWANQyqeIKKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDI 167
                          89*****9888999**************************************************************************** PP

                NF-YC  89 fdflvdivprdel 101
                          fdflvdivpr++l
  Glyma.20G232400.1.p 168 FDFLVDIVPREDL 180
                          **********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.34E-3267171IPR009072Histone-fold
PfamPF008081.7E-2199162IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.1E-37100177IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDNQGHGHGQ NPSMGIVGNG PQLPYGSNPY QASHITGSPG MVVASPGTIQ STGQPAATQL  60
GQHQLAYQQQ QQQLQQRLQA FWANQYQEIK KVTDFKNHSL PLARIKKIMK ADEDVRMISA  120
EAPVIFARAC EMFILELTLR SWNHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREDL  180
KDEVLASMPR GTVPVTGPAE ALPYCYIPPQ HAQQVGAAGV MMGNKPVMDP YAQQSHPYNM  240
APQMWPQLLP PPPPEQQQSS PDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_C3e-4187177294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B3e-4187177294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149155RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014628103.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
SwissprotQ8L4B22e-82NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A0B2QF830.0A0A0B2QF83_GLYSO; Nuclear transcription factor Y subunit C-9
TrEMBLI1NIX70.0I1NIX7_SOYBN; Uncharacterized protein
STRINGGLYMA20G37620.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31517117
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.48e-80nuclear factor Y, subunit C9