PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G224700.1.p
Common NameGLYMA_20G224700, LOC100807570
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 333aa    MW: 35911.6 Da    PI: 6.392
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G224700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-09181225554
                          HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Glyma.20G224700.1.p 181 HSIAERLRRERIAERMKALQELVPSiN------KTDRAAMLDEIVDYVKFL 225
                          99***********************77......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-15174235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.74E-11174230No hitNo description
PROSITE profilePS5088816.126176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14178236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-7181225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-11182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAGNSGSEGL GDDFFEQILA VPEAGTVGML QLGSTTGAFR GASGLMPLGL NLEQAAFLRH  60
QVNVDDDVVH VNVDDATIHQ HHLTLHNNNN SSSPSSTAPI TDRDSMHMRG LFSAFGQLHT  120
PIRPTLPLPP PPRQPQLHLH HHNQQFQGQA AAAPASMAAM PQPPGIRPRV RARRGQATDP  180
HSIAERLRRE RIAERMKALQ ELVPSINKTD RAAMLDEIVD YVKFLRLQVK VLSMSRLGGA  240
GAVAQLVADV PLSAVEGDQD IEGGANEQAW DKWSNDGTEQ QVAKLMEEDV GAAMQFLQSK  300
ALCIMPIPLA SAIFRMPQSE ASTGIKPESN SH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185190RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.533390.0flower| hypocotyl| pod| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1416381e-178BT141638.1 Lotus japonicus clone JCVI-FLLj-6C12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606461.10.0PREDICTED: transcription factor UNE12-like isoform X1
SwissprotO227686e-77UNE12_ARATH; Transcription factor UNE12
TrEMBLI1NIQ50.0I1NIQ5_SOYBN; Uncharacterized protein
STRINGGLYMA20G36770.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.33e-64bHLH family protein