PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G216600.1.p
Common NameGLYMA_20G216600, LOC100782268
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Dof
Protein Properties Length: 303aa    MW: 32912.4 Da    PI: 8.5584
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G216600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.73.1e-393696262
               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                         ke+a++cprC+s ntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+ss
  Glyma.20G216600.1.p 36 KEQAINCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRSS 96
                         7899******************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-293394IPR003851Zinc finger, Dof-type
PfamPF027011.6E-333894IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6214094IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104278IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDTAQWPQEM VVKPIEDIVV TNTCPKAVES KPRPQKEQAI NCPRCHSINT KFCYYNNYSL  60
TQPRYFCKTC RRYWTEGGTL RNIPVGGGSR KNKRSSASCS TPNNSHNNNN STNKKLLSDL  120
VITPPTLSHT QNPNSNNAIH QGQDLNLAFP SSTPDFRKIS ELVQQNNNNN NSSNNSMSAS  180
ASSSSTTTTT STSHLSALEL LTGITSSSSA GLTSFMPVPV PSDPNSIYTC GFPLQDFKPT  240
LNFSLDGIGN GYTSLQNVQS GRLLFPSDDL RQVSSSTITT MDQKQQGDST GYWTGMLGGG  300
SW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.217170.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269|PubMed:20563990}.
UniprotTISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269|PubMed:20563990}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G216600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8572690.0DQ857269.1 Glycine max Dof19 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556421.10.0dof zinc finger protein DOF4.6 isoform X1
SwissprotQ8LAP81e-61DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLI1NIG50.0I1NIG5_SOYBN; Uncharacterized protein
STRINGGLYMA20G35910.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.16e-60Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]