PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G203600.1.p
Common NameGLYMA_20G203600, LOC100776376
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 135aa    MW: 15211 Da    PI: 9.3575
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G203600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP269.37e-221768256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         +y+GVr+++ +g+++AeIrdps++g   r +lg+f+taeeAa+a+++a+ +l+g+
  Glyma.20G203600.1.p 17 RYRGVRRRP-WGKYAAEIRDPSKQG--SRLWLGTFDTAEEAARAYDRAAFNLRGH 68
                         6********.**********98865..**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-321776IPR001471AP2/ERF domain
PfamPF008471.2E-151768IPR001471AP2/ERF domain
SMARTSM003801.6E-381781IPR001471AP2/ERF domain
PROSITE profilePS5103225.0141775IPR001471AP2/ERF domain
CDDcd000183.78E-311775No hitNo description
SuperFamilySSF541712.94E-241776IPR016177DNA-binding domain
PRINTSPR003675.9E-121829IPR001471AP2/ERF domain
PRINTSPR003675.9E-124157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MEEHQKAGKL QGKEEVRYRG VRRRPWGKYA AEIRDPSKQG SRLWLGTFDT AEEAARAYDR  60
AAFNLRGHLA ILNFPSEYYS QIRGSPPYPP HLATPSSSSG AQQRPVFEIP CLDDKVLEDL  120
LGQSEEHKKK NKGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-3261163114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G203600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-37AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555512.13e-96ethylene-responsive transcription factor ERF098
SwissprotQ9LTC56e-46ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLI1NI287e-95I1NI28_SOYBN; Uncharacterized protein
STRINGGLYMA20G34560.11e-95(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-38ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]