PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G203500.1.p
Common NameGLYMA_20G203500, LOC100775830
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 148aa    MW: 16395.9 Da    PI: 6.0219
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G203500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-201868255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr+++ +g+++AeIrd +    + +r++lg+f taeeAa+a+++a+ +++g
  Glyma.20G203500.1.p 18 RYRGVRRRP-WGKFAAEIRDSTR---QgQRVWLGTFNTAEEAARAYDRAAYAMRG 68
                         6********.**********322...24*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.59E-161877No hitNo description
PfamPF008472.1E-151868IPR001471AP2/ERF domain
SMARTSM003801.6E-331882IPR001471AP2/ERF domain
PROSITE profilePS5103223.7361876IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-241878IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.2E-321878IPR001471AP2/ERF domain
PRINTSPR003671.4E-111930IPR001471AP2/ERF domain
PRINTSPR003671.4E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDEEGSRGRA KEDAGDVRYR GVRRRPWGKF AAEIRDSTRQ GQRVWLGTFN TAEEAARAYD  60
RAAYAMRGPF AILNFPDEYP MTAGGATNAA TYSSAASSSS SASSSRHANV EARGRSEQGR  120
EVFEFEYLDD RLLEELLDCE DKKKRGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-3631462128Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G203500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-124AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606367.11e-103ethylene-responsive transcription factor ERF096
RefseqXP_028221348.11e-103ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC53e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A445F7W61e-102A0A445F7W6_GLYSO; Ethylene-responsive transcription factor ERF098
TrEMBLI1NI271e-102I1NI27_SOYBN; Uncharacterized protein
STRINGGLYMA20G34550.11e-103(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.16e-24ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]