PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G193000.1.p
Common NameGLYMA_20G193000, LOC100799383
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 328aa    MW: 36161 Da    PI: 6.6452
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G193000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027218240123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  F++   L  H+r+H
  Glyma.20G193000.1.p 218 HECSICGAEFTSGQALGGHMRRH 240
                          78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.95E-8140163No hitNo description
PfamPF139122.0E-12140165IPR007087Zinc finger, C2H2
SMARTSM003550.25141163IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806141168IPR007087Zinc finger, C2H2
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
SuperFamilySSF576672.95E-8213240No hitNo description
PfamPF139124.8E-13217242IPR007087Zinc finger, C2H2
SMARTSM003550.01218240IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723218240IPR007087Zinc finger, C2H2
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEAPEELSLG GSKDHTNIVK GKRTKRVRPQ SPMPFSITSN SSTGEGEKEE GCNNGDDDNN  60
NMKNEDINNI NSSPTSSAGL QDSTDEEEDM ANCLILLAQG QSRESPKHAE EDAGMNSAKY  120
SSRKFLEAAT LGSSRAGYYV YECKTCNRTY PSFQALGGHR ASHKKPKALM AIGLEKKQQH  180
LLSTDEEEFQ LKTNKSPFSL QLNTKGNLYS NNNKSKVHEC SICGAEFTSG QALGGHMRRH  240
RAPVGTTTPA TLSFTPLALE PEEDHPRKKR NVLNLDLDLN LPAPEDDHRE SKFAFTSKQQ  300
QHQQPQQQQQ PQTSLVFPAP ALVDCHY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G193000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606310.10.0zinc finger protein ZAT5
TrEMBLI1NHS80.0I1NHS8_SOYBN; Uncharacterized protein
STRINGGLYMA20G33480.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-64C2H2 family protein